IL_6S47_007

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6S47|1|AA|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1018

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6S47|1|AA|A|123
6S47|1|AA|U|124
*
6S47|1|AA|A|144
6S47|1|AA|G|145
6S47|1|AA|U|146
6S47|1|AA|U|147
6S47|1|AA|G|148
6S47|1|AA|U|149

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AJ

60S ribosomal protein L8-A

Chain AP

60S ribosomal protein L15-A