IL_6S47_014
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6S47|1|AA|A|398, 6S47|1|AA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_014 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.0698
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6S47|1|AA|G|376
6S47|1|AA|A|377
6S47|1|AA|A|378
6S47|1|AA|C|379
*
6S47|1|AA|G|390
6S47|1|AA|A|391
6S47|1|AA|G|392
6S47|1|AA|U|393
6S47|1|AA|G|394
6S47|1|AA|A|395
6S47|1|AA|A|396
6S47|1|AA|A|397
6S47|1|AA|A|398
6S47|1|AA|A|399
6S47|1|AA|G|400
6S47|1|AA|U|401
6S47|1|AA|A|402
6S47|1|AA|C|403
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- 60S ribosomal protein L17-A
- Chain Aa
- 60S ribosomal protein L26-A
- Chain An
- 60S ribosomal protein L39
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