IL_6S47_017
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_017 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.5278
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|AA|C|435
6S47|1|AA|A|436
6S47|1|AA|G|437
6S47|1|AA|A|438
6S47|1|AA|C|439
6S47|1|AA|A|440
6S47|1|AA|G|494
6S47|1|AA|G|495
*
6S47|1|AA|C|618
6S47|1|AA|A|619
6S47|1|AA|U|620
6S47|1|AA|A|621
6S47|1|AA|A|622
6S47|1|AA|U|623
6S47|1|AA|G|624
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L6-A
- Chain AR
- 60S ribosomal protein L17-A
- Chain Ag
- 60S ribosomal protein L32
- Chain Ah
- 60S ribosomal protein L33-A
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