IL_6S47_019
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6S47|1|AA|A|519, 6S47|1|AA|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_019 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0894
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|AA|G|517
6S47|1|AA|G|518
6S47|1|AA|A|519
6S47|1|AA|U|520
6S47|1|AA|A|521
6S47|1|AA|A|522
6S47|1|AA|A|523
6S47|1|AA|U|524
6S47|1|AA|C|525
*
6S47|1|AA|G|567
6S47|1|AA|G|568
6S47|1|AA|A|569
6S47|1|AA|A|570
6S47|1|AA|U|571
6S47|1|AA|A|572
6S47|1|AA|C|573
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain AI
- 60S ribosomal protein L7-A
- Chain AO
- 60S ribosomal protein L14-A
- Chain AU
- 60S ribosomal protein L20-A
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