IL_6S47_021
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUC*GCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_021 not in the Motif Atlas
- Homologous match to IL_5TBW_021
- Geometric discrepancy: 0.0717
- The information below is about IL_5TBW_021
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6S47|1|AA|G|668
6S47|1|AA|U|669
6S47|1|AA|C|670
*
6S47|1|AA|G|792
6S47|1|AA|C|793
6S47|1|AA|U|794
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain AN
- 60S ribosomal protein L13-A
- Chain AS
- 60S ribosomal protein L18-A
- Chain Ac
- 60S ribosomal protein L28
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