IL_6S47_026

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1021

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|C|758
6S47|1|AA|U|759
6S47|1|AA|G|760
6S47|1|AA|A|761
6S47|1|AA|U|762
6S47|1|AA|G|763
*
6S47|1|AA|C|768
6S47|1|AA|G|769
6S47|1|AA|G|770
6S47|1|AA|A|771
6S47|1|AA|U|772
6S47|1|AA|G|773

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L13-A

Chain Ac

60S ribosomal protein L28

Chain Aq

60S ribosomal protein L42-A