IL_6S47_036
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGUAUC*GAAG
- Length
- 10 nucleotides
- Bulged bases
- 6S47|1|AA|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_036 not in the Motif Atlas
- Homologous match to IL_8C3A_039
- Geometric discrepancy: 0.4526
- The information below is about IL_8C3A_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_59027.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|AA|C|977
6S47|1|AA|G|978
6S47|1|AA|U|979
6S47|1|AA|A|980
6S47|1|AA|U|981
6S47|1|AA|C|982
*
6S47|1|AA|G|1101
6S47|1|AA|A|1102
6S47|1|AA|A|1103
6S47|1|AA|G|1104
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AI
- 60S ribosomal protein L7-A
- Chain AS
- 60S ribosomal protein L18-A
- Chain Ad
- 60S ribosomal protein L29
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