IL_6S47_041

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_041 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1122

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6S47|1|AA|A|1006
6S47|1|AA|U|1007
6S47|1|AA|U|1008
6S47|1|AA|A|1009
*
6S47|1|AA|U|1041
6S47|1|AA|U|1042
6S47|1|AA|C|1043
6S47|1|AA|U|1044

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L5

Chain AL

60S ribosomal protein L10