IL_6S47_042

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_042 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.1066

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6S47|1|AA|A|1009
6S47|1|AA|G|1010
6S47|1|AA|A|1011
*
6S47|1|AA|U|1039
6S47|1|AA|A|1040
6S47|1|AA|U|1041

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L5

Chain AL

60S ribosomal protein L10