IL_6S47_052

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6S47|1|AA|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_052 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.073

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6S47|1|AA|G|1207
6S47|1|AA|U|1208
6S47|1|AA|G|1209
*
6S47|1|AA|C|1296
6S47|1|AA|C|1297

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AK

60S ribosomal protein L9-A

Chain AU

60S ribosomal protein L20-A

Chain Ao

Ubiquitin-60S ribosomal protein L40