IL_6S47_080

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_080 not in the Motif Atlas

Homologous match to IL_5TBW_081

Geometric discrepancy: 0.3481

The information below is about IL_5TBW_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6S47|1|AA|C|1951
6S47|1|AA|G|1952
6S47|1|AA|G|1953
*
6S47|1|AA|C|2094
6S47|1|AA|G|2095

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19-A

Chain BJ

40S ribosomal protein S8-A

Chain BM

40S ribosomal protein S11-A