IL_6S47_099
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_099 not in the Motif Atlas
- Homologous match to IL_8C3A_110
- Geometric discrepancy: 0.1549
- The information below is about IL_8C3A_110
- Detailed Annotation
- Single stack bend with bulge
- Broad Annotation
- Single stack bend with bulge
- Motif group
- IL_39137.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6S47|1|AA|G|2770
6S47|1|AA|U|2771
6S47|1|AA|C|2772
6S47|1|AA|C|2773
*
6S47|1|AA|G|2787
6S47|1|AA|C|2788
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AN
- 60S ribosomal protein L13-A
- Chain AS
- 60S ribosomal protein L18-A
- Chain Ac
- 60S ribosomal protein L28
- Chain Aq
- 60S ribosomal protein L42-A
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