IL_6S47_104

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_104 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0881

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6S47|1|AA|U|2835
6S47|1|AA|C|2836
6S47|1|AA|A|2837
6S47|1|AA|A|2838
6S47|1|AA|G|2839
*
6S47|1|AA|C|2849
6S47|1|AA|G|2850
6S47|1|AA|A|2851
6S47|1|AA|C|2852
6S47|1|AA|A|2853

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L10

Chain Ao

Ubiquitin-60S ribosomal protein L40