IL_6S47_109

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6S47|1|AA|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_109 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.1404

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6S47|1|AA|U|2891
6S47|1|AA|A|2892
*
6S47|1|AA|U|2909
6S47|1|AA|A|2910
6S47|1|AA|A|2911
6S47|1|AA|G|2912

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L9-A

Chain AQ

60S ribosomal protein L16-A

Chain Ao

Ubiquitin-60S ribosomal protein L40