IL_6S47_124

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

6S47|1|AA|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_124 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.1152

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6S47|1|AA|C|3225
6S47|1|AA|A|3226
6S47|1|AA|A|3227
6S47|1|AA|C|3228
6S47|1|AA|G|3229
*
6S47|1|AA|U|3258
6S47|1|AA|U|3259
6S47|1|AA|G|3260

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6-A

Chain AO

60S ribosomal protein L14-A

Chain AQ

60S ribosomal protein L16-A