3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
UUAUUU*AUUCA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_154 not in the Motif Atlas
Homologous match to IL_4V88_393
Geometric discrepancy: 0.1255
The information below is about IL_4V88_393
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37842.2
Basepair signature
cWW-cWW-L-R-cWW-cWW-R-L
Number of instances in this motif group
4

Unit IDs

6S47|1|BA|U|117
6S47|1|BA|U|118
6S47|1|BA|A|119
6S47|1|BA|U|120
6S47|1|BA|U|121
6S47|1|BA|U|122
*
6S47|1|BA|A|295
6S47|1|BA|U|296
6S47|1|BA|U|297
6S47|1|BA|C|298
6S47|1|BA|A|299

Current chains

Chain BA
18S rRNA (1707-MER)

Nearby chains

Chain BF
40S ribosomal protein S4-A
Chain BJ
40S ribosomal protein S8-A

Coloring options:


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