IL_6S47_154
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_154 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.1255
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
6S47|1|BA|U|117
6S47|1|BA|U|118
6S47|1|BA|A|119
6S47|1|BA|U|120
6S47|1|BA|U|121
6S47|1|BA|U|122
*
6S47|1|BA|A|295
6S47|1|BA|U|296
6S47|1|BA|U|297
6S47|1|BA|C|298
6S47|1|BA|A|299
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BF
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S8-A
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