IL_6S47_158

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6S47|1|BA|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_158 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.149

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6S47|1|BA|G|204
6S47|1|BA|U|205
6S47|1|BA|A|206
*
6S47|1|BA|U|259
6S47|1|BA|U|260
6S47|1|BA|U|261
6S47|1|BA|U|262
6S47|1|BA|C|263

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BF

40S ribosomal protein S4-A

Chain BJ

40S ribosomal protein S8-A