3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
UUUCGA*UG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_165 not in the Motif Atlas
Homologous match to IL_4V88_403
Geometric discrepancy: 0.2638
The information below is about IL_4V88_403
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85724.1
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
2

Unit IDs

6S47|1|BA|U|318
6S47|1|BA|U|319
6S47|1|BA|U|320
6S47|1|BA|C|321
6S47|1|BA|G|322
6S47|1|BA|A|323
*
6S47|1|BA|U|345
6S47|1|BA|G|346

Current chains

Chain BA
18S rRNA (1707-MER)

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain AT
60S ribosomal protein L19-A
Chain BJ
40S ribosomal protein S8-A
Chain BM
40S ribosomal protein S11-A

Coloring options:


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