IL_6S47_173

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_173 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.1402

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6S47|1|BA|A|518
6S47|1|BA|C|519
6S47|1|BA|A|520
*
6S47|1|BA|U|532
6S47|1|BA|U|533

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BK

40S ribosomal protein S9-A

Chain BZ

40S ribosomal protein S24-A