IL_6S47_175

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6S47|1|BA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_175 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.2987

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6S47|1|BA|G|557
6S47|1|BA|U|558
6S47|1|BA|C|559
*
6S47|1|BA|G|586
6S47|1|BA|C|587

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain Bf

40S ribosomal protein S30-A