IL_6S47_184

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUUU*AUCG

Length

9 nucleotides

Bulged bases

6S47|1|BA|U|820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_184 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3438

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6S47|1|BA|C|818
6S47|1|BA|G|819
6S47|1|BA|U|820
6S47|1|BA|U|821
6S47|1|BA|U|822
*
6S47|1|BA|A|850
6S47|1|BA|U|851
6S47|1|BA|C|852
6S47|1|BA|G|853

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BI

40S ribosomal protein S7-A