IL_6S47_185

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_185 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.0816

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6S47|1|BA|A|865
6S47|1|BA|G|866
*
6S47|1|BA|C|962
6S47|1|BA|A|963
6S47|1|BA|U|964
6S47|1|BA|U|965

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BO

40S ribosomal protein S13

Chain BX

40S ribosomal protein S22-A

Chain Bc

40S ribosomal protein S27-A