IL_6S47_190
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6S47|1|BA|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_190 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.1958
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|BA|U|893
6S47|1|BA|U|894
6S47|1|BA|G|895
6S47|1|BA|U|896
6S47|1|BA|C|897
6S47|1|BA|A|898
6S47|1|BA|G|899
*
6S47|1|BA|C|910
6S47|1|BA|U|911
6S47|1|BA|U|912
6S47|1|BA|G|913
6S47|1|BA|G|914
6S47|1|BA|A|915
6S47|1|BA|U|916
6S47|1|BA|U|917
6S47|1|BA|U|918
6S47|1|BA|A|919
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 40S ribosomal protein S1-A
- Chain BP
- 40S ribosomal protein S14-A
Coloring options: