IL_6S47_191
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_191 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.085
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|G|985
6S47|1|BA|G|986
6S47|1|BA|G|987
6S47|1|BA|A|988
6S47|1|BA|U|989
6S47|1|BA|C|990
*
6S47|1|BA|G|1014
6S47|1|BA|U|1015
6S47|1|BA|C|1016
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 60S ribosomal protein L2-A
- Chain Ar
- 60S ribosomal protein L43-A
- Chain BP
- 40S ribosomal protein S14-A
- Chain Bb
- 40S ribosomal protein S26-B
Coloring options: