IL_6S47_201

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_201 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.1072

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6S47|1|BA|G|1178
6S47|1|BA|G|1179
*
6S47|1|BA|C|1459
6S47|1|BA|A|1460
6S47|1|BA|C|1461

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BQ

40S ribosomal protein S15

Chain BT

40S ribosomal protein S18-A