3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
GUC*GUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_202 not in the Motif Atlas
Homologous match to IL_4V88_446
Geometric discrepancy: 0.1305
The information below is about IL_4V88_446
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6S47|1|BA|G|1213
6S47|1|BA|U|1214
6S47|1|BA|C|1215
*
6S47|1|BA|G|1448
6S47|1|BA|U|1449
6S47|1|BA|U|1450

Current chains

Chain BA
18S rRNA (1707-MER)

Nearby chains

Chain BL
40S ribosomal protein S10-A
Chain BQ
40S ribosomal protein S15
Chain Be
40S ribosomal protein S29-A
Chain Bg
Ubiquitin-40S ribosomal protein S31

Coloring options:


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