IL_6S47_204

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUUG*CUUGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|BA|A|1230
6S47|1|BA|U|1231
6S47|1|BA|U|1232
6S47|1|BA|G|1233
*
6S47|1|BA|C|1252
6S47|1|BA|U|1253
6S47|1|BA|U|1254
6S47|1|BA|G|1255
6S47|1|BA|A|1256
6S47|1|BA|U|1257

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BL

40S ribosomal protein S10-A

Chain BN

40S ribosomal protein S12

Chain Be

40S ribosomal protein S29-A

Chain Bg

Ubiquitin-40S ribosomal protein S31