IL_6S47_207
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6S47|1|BA|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_207 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1536
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6S47|1|BA|U|1272
6S47|1|BA|G|1273
6S47|1|BA|C|1274
6S47|1|BA|A|1275
6S47|1|BA|U|1276
*
6S47|1|BA|A|1436
6S47|1|BA|U|1437
6S47|1|BA|G|1438
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BE
- 40S ribosomal protein S3
- Chain BL
- 40S ribosomal protein S10-A
- Chain BV
- 40S ribosomal protein S20
- Chain Be
- 40S ribosomal protein S29-A
Coloring options: