IL_6S47_210

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_210 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.3902

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6S47|1|BA|U|1290
6S47|1|BA|G|1291
6S47|1|BA|G|1292
*
6S47|1|BA|C|1323
6S47|1|BA|G|1324
6S47|1|BA|A|1325

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BB

40S ribosomal protein S0-A

Chain BD

40S ribosomal protein S2

Chain BE

40S ribosomal protein S3

Chain BS

40S ribosomal protein S17-A