IL_6S47_214

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

6S47|1|BA|U|1370, 6S47|1|BA|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_214 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.1793

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6S47|1|BA|G|1352
6S47|1|BA|U|1353
6S47|1|BA|G|1354
*
6S47|1|BA|U|1369
6S47|1|BA|U|1370
6S47|1|BA|A|1371
6S47|1|BA|U|1372
6S47|1|BA|C|1373

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BR

40S ribosomal protein S16-A

Chain BU

40S ribosomal protein S19-A

Chain BV

40S ribosomal protein S20