IL_6S47_219
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_219 not in the Motif Atlas
- Homologous match to IL_4V88_462
- Geometric discrepancy: 0.1113
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6S47|1|BA|G|1540
6S47|1|BA|G|1541
6S47|1|BA|G|1542
6S47|1|BA|A|1543
6S47|1|BA|U|1544
6S47|1|BA|A|1545
*
6S47|1|BA|U|1566
6S47|1|BA|U|1567
6S47|1|BA|C|1568
6S47|1|BA|A|1569
6S47|1|BA|A|1570
6S47|1|BA|C|1571
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BT
- 40S ribosomal protein S18-A
- Chain BU
- 40S ribosomal protein S19-A
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