IL_6S47_221

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_221 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.1289

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6S47|1|BA|G|1638
6S47|1|BA|C|1639
6S47|1|BA|C|1640
6S47|1|BA|C|1641
*
6S47|1|BA|G|1760
6S47|1|BA|U|1761
6S47|1|BA|A|1762
6S47|1|BA|A|1763
6S47|1|BA|C|1764

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41-B