IL_6S47_223

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|BA|C|1644
6S47|1|BA|G|1645
6S47|1|BA|C|1646
6S47|1|BA|U|1647
6S47|1|BA|A|1648
*
6S47|1|BA|U|1752
6S47|1|BA|A|1753
6S47|1|BA|A|1754
6S47|1|BA|A|1755
6S47|1|BA|A|1756
6S47|1|BA|G|1757

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41-B

Chain BY

40S ribosomal protein S23-A

Chain Bf

40S ribosomal protein S30-A