IL_6S47_233

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

6S47|1|AA|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_233 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.2352

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6S47|1|AA|C|977
6S47|1|AA|G|978
6S47|1|AA|U|979
6S47|1|AA|A|980
6S47|1|AA|U|981
*
6S47|1|AA|A|1102
6S47|1|AA|A|1103
6S47|1|AA|G|1104

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L7-A

Chain AS

60S ribosomal protein L18-A

Chain Ad

60S ribosomal protein L29