IL_6S47_236

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6S47|1|AA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_236 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0591

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6S47|1|AA|G|1898
6S47|1|AA|G|1899
6S47|1|AA|A|1900
6S47|1|AA|A|1901
6S47|1|AA|G|1902
6S47|1|AA|U|1903
6S47|1|AA|C|1904
6S47|1|AA|G|1905
6S47|1|AA|G|1906
*
6S47|1|AA|C|2333
6S47|1|AA|U|2334
6S47|1|AA|G|2335
6S47|1|AA|U|2336
6S47|1|AA|C|2337

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AX

60S ribosomal protein L23-A