IL_6S47_240

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUACAGGGCCC*GGGUCUUGUAAUU

Length

25 nucleotides

Bulged bases

6S47|1|BA|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|BA|G|480
6S47|1|BA|A|481
6S47|1|BA|U|482
6S47|1|BA|A|483
6S47|1|BA|C|484
6S47|1|BA|A|485
6S47|1|BA|G|486
6S47|1|BA|G|487
6S47|1|BA|G|488
6S47|1|BA|C|489
6S47|1|BA|C|490
6S47|1|BA|C|491
*
6S47|1|BA|G|496
6S47|1|BA|G|497
6S47|1|BA|G|498
6S47|1|BA|U|499
6S47|1|BA|C|500
6S47|1|BA|U|501
6S47|1|BA|U|502
6S47|1|BA|G|503
6S47|1|BA|U|504
6S47|1|BA|A|505
6S47|1|BA|A|506
6S47|1|BA|U|507
6S47|1|BA|U|508

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BK

40S ribosomal protein S9-A

Chain Bf

40S ribosomal protein S30-A