IL_6S47_241

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6S47|1|BA|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_241 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3527

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6S47|1|BA|G|868
6S47|1|BA|A|869
*
6S47|1|BA|U|958
6S47|1|BA|U|959
6S47|1|BA|U|960

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BO

40S ribosomal protein S13

Chain Bc

40S ribosomal protein S27-A