IL_6SG9_004
3D structure
- PDB id
- 6SG9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Head domain of the mt-SSU assemblosome from Trypanosoma brucei
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUUAUAUUUAUUCAUAUAAUUAAUAGGAUAAUAUUUGUAGUUUUUGAUACCAUG*UAUCAUAAUCAAAAUUUAUUAUUUAUAUUAAAUAUGUAUGUG
- Length
- 97 nucleotides
- Bulged bases
- 6SG9|1|CA|U|398, 6SG9|1|CA|A|399, 6SG9|1|CA|U|400, 6SG9|1|CA|A|401, 6SG9|1|CA|U|402, 6SG9|1|CA|U|403, 6SG9|1|CA|U|404, 6SG9|1|CA|A|405, 6SG9|1|CA|U|406, 6SG9|1|CA|U|407, 6SG9|1|CA|C|408, 6SG9|1|CA|A|409, 6SG9|1|CA|U|410, 6SG9|1|CA|A|411, 6SG9|1|CA|U|412, 6SG9|1|CA|A|413, 6SG9|1|CA|A|414, 6SG9|1|CA|U|415, 6SG9|1|CA|U|416, 6SG9|1|CA|A|417, 6SG9|1|CA|G|421, 6SG9|1|CA|G|422, 6SG9|1|CA|A|425, 6SG9|1|CA|A|426, 6SG9|1|CA|U|427, 6SG9|1|CA|A|428, 6SG9|1|CA|U|429, 6SG9|1|CA|U|430, 6SG9|1|CA|U|431, 6SG9|1|CA|G|432, 6SG9|1|CA|U|433, 6SG9|1|CA|A|434, 6SG9|1|CA|G|435, 6SG9|1|CA|U|436, 6SG9|1|CA|U|437, 6SG9|1|CA|U|438, 6SG9|1|CA|U|439, 6SG9|1|CA|U|440, 6SG9|1|CA|A|481, 6SG9|1|CA|U|482, 6SG9|1|CA|A|487, 6SG9|1|CA|A|488, 6SG9|1|CA|A|489, 6SG9|1|CA|A|490, 6SG9|1|CA|U|491, 6SG9|1|CA|U|492, 6SG9|1|CA|U|493, 6SG9|1|CA|A|494, 6SG9|1|CA|U|495, 6SG9|1|CA|U|496, 6SG9|1|CA|A|497, 6SG9|1|CA|U|498, 6SG9|1|CA|U|499, 6SG9|1|CA|U|500, 6SG9|1|CA|A|501, 6SG9|1|CA|U|502, 6SG9|1|CA|A|503, 6SG9|1|CA|U|504, 6SG9|1|CA|U|505, 6SG9|1|CA|A|506, 6SG9|1|CA|A|507, 6SG9|1|CA|A|508, 6SG9|1|CA|U|509, 6SG9|1|CA|A|510, 6SG9|1|CA|U|511, 6SG9|1|CA|A|514, 6SG9|1|CA|U|515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SG9|1|CA|U|395
6SG9|1|CA|A|396
6SG9|1|CA|U|397
6SG9|1|CA|U|398
6SG9|1|CA|A|399
6SG9|1|CA|U|400
6SG9|1|CA|A|401
6SG9|1|CA|U|402
6SG9|1|CA|U|403
6SG9|1|CA|U|404
6SG9|1|CA|A|405
6SG9|1|CA|U|406
6SG9|1|CA|U|407
6SG9|1|CA|C|408
6SG9|1|CA|A|409
6SG9|1|CA|U|410
6SG9|1|CA|A|411
6SG9|1|CA|U|412
6SG9|1|CA|A|413
6SG9|1|CA|A|414
6SG9|1|CA|U|415
6SG9|1|CA|U|416
6SG9|1|CA|A|417
6SG9|1|CA|A|418
6SG9|1|CA|U|419
6SG9|1|CA|A|420
6SG9|1|CA|G|421
6SG9|1|CA|G|422
6SG9|1|CA|A|423
6SG9|1|CA|U|424
6SG9|1|CA|A|425
6SG9|1|CA|A|426
6SG9|1|CA|U|427
6SG9|1|CA|A|428
6SG9|1|CA|U|429
6SG9|1|CA|U|430
6SG9|1|CA|U|431
6SG9|1|CA|G|432
6SG9|1|CA|U|433
6SG9|1|CA|A|434
6SG9|1|CA|G|435
6SG9|1|CA|U|436
6SG9|1|CA|U|437
6SG9|1|CA|U|438
6SG9|1|CA|U|439
6SG9|1|CA|U|440
6SG9|1|CA|G|441
6SG9|1|CA|A|442
6SG9|1|CA|U|443
6SG9|1|CA|A|444
6SG9|1|CA|C|445
6SG9|1|CA|C|446
6SG9|1|CA|A|447
6SG9|1|CA|U|448
6SG9|1|CA|G|449
*
6SG9|1|CA|U|477
6SG9|1|CA|A|478
6SG9|1|CA|U|479
6SG9|1|CA|C|480
6SG9|1|CA|A|481
6SG9|1|CA|U|482
6SG9|1|CA|A|483
6SG9|1|CA|A|484
6SG9|1|CA|U|485
6SG9|1|CA|C|486
6SG9|1|CA|A|487
6SG9|1|CA|A|488
6SG9|1|CA|A|489
6SG9|1|CA|A|490
6SG9|1|CA|U|491
6SG9|1|CA|U|492
6SG9|1|CA|U|493
6SG9|1|CA|A|494
6SG9|1|CA|U|495
6SG9|1|CA|U|496
6SG9|1|CA|A|497
6SG9|1|CA|U|498
6SG9|1|CA|U|499
6SG9|1|CA|U|500
6SG9|1|CA|A|501
6SG9|1|CA|U|502
6SG9|1|CA|A|503
6SG9|1|CA|U|504
6SG9|1|CA|U|505
6SG9|1|CA|A|506
6SG9|1|CA|A|507
6SG9|1|CA|A|508
6SG9|1|CA|U|509
6SG9|1|CA|A|510
6SG9|1|CA|U|511
6SG9|1|CA|G|512
6SG9|1|CA|U|513
6SG9|1|CA|A|514
6SG9|1|CA|U|515
6SG9|1|CA|G|516
6SG9|1|CA|U|517
6SG9|1|CA|G|518
Current chains
- Chain CA
- 9S rRNA
Nearby chains
- Chain CN
- uS14m
- Chain CS
- uS19m
- Chain Ci
- mS33
- Chain Ck
- mS35
- Chain DB
- mS49
- Chain DF
- mS53
- Chain DH
- mS55 (KRIPP8)
- Chain DJ
- mS57
- Chain DT
- mS67
- Chain DV
- mS69
- Chain DW
- mS70
- Chain DX
- mS71
- Chain DY
- mS72
- Chain F1
- mt-SAF1 (RSM22)
- Chain FF
- mt-SAF14
- Chain FG
- mt-SAF15
- Chain FI
- mt-SAF17
- Chain FJ
- mt-SAF18
- Chain FL
- mt-SAF20
Coloring options: