IL_6SGA_006
3D structure
- PDB id
- 6SGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Body domain of the mt-SSU assemblosome from Trypanosoma brucei
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAAUGUUUUAUCAUUUUAUAAAGG*UGGGUGUGGAAAAAUAAAAAAAAUAAUUAAUAUAUAUCAAUAAUA
- Length
- 70 nucleotides
- Bulged bases
- 6SGA|1|CA|U|44, 6SGA|1|CA|G|45, 6SGA|1|CA|A|50, 6SGA|1|CA|U|51, 6SGA|1|CA|C|52, 6SGA|1|CA|G|157, 6SGA|1|CA|G|158, 6SGA|1|CA|G|161, 6SGA|1|CA|U|170, 6SGA|1|CA|A|171, 6SGA|1|CA|A|172, 6SGA|1|CA|A|173, 6SGA|1|CA|A|174, 6SGA|1|CA|A|178, 6SGA|1|CA|U|179, 6SGA|1|CA|U|182, 6SGA|1|CA|U|183, 6SGA|1|CA|A|184, 6SGA|1|CA|A|185, 6SGA|1|CA|U|186, 6SGA|1|CA|A|187, 6SGA|1|CA|U|188, 6SGA|1|CA|A|189, 6SGA|1|CA|A|191, 6SGA|1|CA|A|195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGA|1|CA|U|40
6SGA|1|CA|A|41
6SGA|1|CA|A|42
6SGA|1|CA|A|43
6SGA|1|CA|U|44
6SGA|1|CA|G|45
6SGA|1|CA|U|46
6SGA|1|CA|U|47
6SGA|1|CA|U|48
6SGA|1|CA|U|49
6SGA|1|CA|A|50
6SGA|1|CA|U|51
6SGA|1|CA|C|52
6SGA|1|CA|A|53
6SGA|1|CA|U|54
6SGA|1|CA|U|55
6SGA|1|CA|U|56
6SGA|1|CA|U|57
6SGA|1|CA|A|58
6SGA|1|CA|U|59
6SGA|1|CA|A|60
6SGA|1|CA|A|61
6SGA|1|CA|A|62
6SGA|1|CA|G|63
6SGA|1|CA|G|64
*
6SGA|1|CA|U|156
6SGA|1|CA|G|157
6SGA|1|CA|G|158
6SGA|1|CA|G|159
6SGA|1|CA|U|160
6SGA|1|CA|G|161
6SGA|1|CA|U|162
6SGA|1|CA|G|163
6SGA|1|CA|G|164
6SGA|1|CA|A|165
6SGA|1|CA|A|166
6SGA|1|CA|A|167
6SGA|1|CA|A|168
6SGA|1|CA|A|169
6SGA|1|CA|U|170
6SGA|1|CA|A|171
6SGA|1|CA|A|172
6SGA|1|CA|A|173
6SGA|1|CA|A|174
6SGA|1|CA|A|175
6SGA|1|CA|A|176
6SGA|1|CA|A|177
6SGA|1|CA|A|178
6SGA|1|CA|U|179
6SGA|1|CA|A|180
6SGA|1|CA|A|181
6SGA|1|CA|U|182
6SGA|1|CA|U|183
6SGA|1|CA|A|184
6SGA|1|CA|A|185
6SGA|1|CA|U|186
6SGA|1|CA|A|187
6SGA|1|CA|U|188
6SGA|1|CA|A|189
6SGA|1|CA|U|190
6SGA|1|CA|A|191
6SGA|1|CA|U|192
6SGA|1|CA|C|193
6SGA|1|CA|A|194
6SGA|1|CA|A|195
6SGA|1|CA|U|196
6SGA|1|CA|A|197
6SGA|1|CA|A|198
6SGA|1|CA|U|199
6SGA|1|CA|A|200
Current chains
- Chain CA
- 9S rRNA
Nearby chains
- Chain CO
- uS15m
- Chain CP
- bS16m
- Chain Ca
- mS22
- Chain Cd
- mS26
- Chain Cj
- mS34
- Chain Cp
- mS41
- Chain DP
- mS63 (KRIPP16)
- Chain DR
- mS65
- Chain F1
- mt-SAF1 (RSM22)
- Chain F3
- mt-SAF3
- Chain F8
- mt-SAF8
- Chain FE
- mt-SAF13
- Chain FO
- mt-SAF22 (KRIPP17)
- Chain FW
- mt-SAF26
Coloring options: