IL_6SGB_010
3D structure
- PDB id
- 6SGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assemblosome of Trypanosoma brucei
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAUAAAUUAUAU*GAUAAAAUAAGAAA
- Length
- 27 nucleotides
- Bulged bases
- 6SGB|1|CA|U|383, 6SGB|1|CA|A|385, 6SGB|1|CA|A|386, 6SGB|1|CA|U|387, 6SGB|1|CA|U|388, 6SGB|1|CA|A|389, 6SGB|1|CA|U|390, 6SGB|1|CA|U|523, 6SGB|1|CA|A|524, 6SGB|1|CA|A|525, 6SGB|1|CA|A|526, 6SGB|1|CA|A|527, 6SGB|1|CA|U|528, 6SGB|1|CA|A|529
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGB|1|CA|U|380
6SGB|1|CA|U|381
6SGB|1|CA|A|382
6SGB|1|CA|U|383
6SGB|1|CA|A|384
6SGB|1|CA|A|385
6SGB|1|CA|A|386
6SGB|1|CA|U|387
6SGB|1|CA|U|388
6SGB|1|CA|A|389
6SGB|1|CA|U|390
6SGB|1|CA|A|391
6SGB|1|CA|U|392
*
6SGB|1|CA|G|521
6SGB|1|CA|A|522
6SGB|1|CA|U|523
6SGB|1|CA|A|524
6SGB|1|CA|A|525
6SGB|1|CA|A|526
6SGB|1|CA|A|527
6SGB|1|CA|U|528
6SGB|1|CA|A|529
6SGB|1|CA|A|530
6SGB|1|CA|G|531
6SGB|1|CA|A|532
6SGB|1|CA|A|533
6SGB|1|CA|A|534
Current chains
- Chain CA
- 9S rRNA
Nearby chains
- Chain CE
- uS5m
- Chain CI
- uS9m
- Chain CK
- uS11m
- Chain CN
- uS14m
- Chain Cn
- mS38
- Chain DL
- mS59
- Chain DV
- mS69
- Chain DW
- mS70
- Chain DY
- mS72
- Chain F1
- mt-SAF1 (RSM22)
- Chain F4
- mt-SAF4
- Chain FJ
- mt-SAF18
Coloring options: