IL_6SGB_011
3D structure
- PDB id
- 6SGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assemblosome of Trypanosoma brucei
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUUAUAUUUAUUCAUAUAAUUAAUAGGAUAAUAUUUGUAGUUUUUGAUACCAUG*UAUCAUAAUCAAAAUUUAUUAUUUAUAUUAAAUAUGUAUGUG
- Length
- 97 nucleotides
- Bulged bases
- 6SGB|1|CA|U|398, 6SGB|1|CA|A|399, 6SGB|1|CA|U|400, 6SGB|1|CA|A|401, 6SGB|1|CA|U|402, 6SGB|1|CA|U|403, 6SGB|1|CA|U|404, 6SGB|1|CA|A|405, 6SGB|1|CA|U|406, 6SGB|1|CA|U|407, 6SGB|1|CA|C|408, 6SGB|1|CA|A|409, 6SGB|1|CA|U|410, 6SGB|1|CA|A|411, 6SGB|1|CA|U|412, 6SGB|1|CA|A|413, 6SGB|1|CA|A|414, 6SGB|1|CA|U|415, 6SGB|1|CA|U|416, 6SGB|1|CA|A|417, 6SGB|1|CA|G|421, 6SGB|1|CA|G|422, 6SGB|1|CA|A|425, 6SGB|1|CA|A|426, 6SGB|1|CA|U|427, 6SGB|1|CA|A|428, 6SGB|1|CA|U|429, 6SGB|1|CA|U|430, 6SGB|1|CA|U|431, 6SGB|1|CA|G|432, 6SGB|1|CA|U|433, 6SGB|1|CA|A|434, 6SGB|1|CA|G|435, 6SGB|1|CA|U|436, 6SGB|1|CA|U|437, 6SGB|1|CA|U|438, 6SGB|1|CA|U|439, 6SGB|1|CA|U|440, 6SGB|1|CA|A|481, 6SGB|1|CA|U|482, 6SGB|1|CA|A|487, 6SGB|1|CA|A|488, 6SGB|1|CA|A|489, 6SGB|1|CA|A|490, 6SGB|1|CA|U|491, 6SGB|1|CA|U|492, 6SGB|1|CA|U|493, 6SGB|1|CA|A|494, 6SGB|1|CA|U|495, 6SGB|1|CA|U|496, 6SGB|1|CA|A|497, 6SGB|1|CA|U|498, 6SGB|1|CA|U|499, 6SGB|1|CA|U|500, 6SGB|1|CA|A|501, 6SGB|1|CA|U|502, 6SGB|1|CA|A|503, 6SGB|1|CA|U|504, 6SGB|1|CA|U|505, 6SGB|1|CA|A|506, 6SGB|1|CA|A|507, 6SGB|1|CA|A|508, 6SGB|1|CA|U|509, 6SGB|1|CA|A|510, 6SGB|1|CA|U|511, 6SGB|1|CA|A|514, 6SGB|1|CA|U|515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGB|1|CA|U|395
6SGB|1|CA|A|396
6SGB|1|CA|U|397
6SGB|1|CA|U|398
6SGB|1|CA|A|399
6SGB|1|CA|U|400
6SGB|1|CA|A|401
6SGB|1|CA|U|402
6SGB|1|CA|U|403
6SGB|1|CA|U|404
6SGB|1|CA|A|405
6SGB|1|CA|U|406
6SGB|1|CA|U|407
6SGB|1|CA|C|408
6SGB|1|CA|A|409
6SGB|1|CA|U|410
6SGB|1|CA|A|411
6SGB|1|CA|U|412
6SGB|1|CA|A|413
6SGB|1|CA|A|414
6SGB|1|CA|U|415
6SGB|1|CA|U|416
6SGB|1|CA|A|417
6SGB|1|CA|A|418
6SGB|1|CA|U|419
6SGB|1|CA|A|420
6SGB|1|CA|G|421
6SGB|1|CA|G|422
6SGB|1|CA|A|423
6SGB|1|CA|U|424
6SGB|1|CA|A|425
6SGB|1|CA|A|426
6SGB|1|CA|U|427
6SGB|1|CA|A|428
6SGB|1|CA|U|429
6SGB|1|CA|U|430
6SGB|1|CA|U|431
6SGB|1|CA|G|432
6SGB|1|CA|U|433
6SGB|1|CA|A|434
6SGB|1|CA|G|435
6SGB|1|CA|U|436
6SGB|1|CA|U|437
6SGB|1|CA|U|438
6SGB|1|CA|U|439
6SGB|1|CA|U|440
6SGB|1|CA|G|441
6SGB|1|CA|A|442
6SGB|1|CA|U|443
6SGB|1|CA|A|444
6SGB|1|CA|C|445
6SGB|1|CA|C|446
6SGB|1|CA|A|447
6SGB|1|CA|U|448
6SGB|1|CA|G|449
*
6SGB|1|CA|U|477
6SGB|1|CA|A|478
6SGB|1|CA|U|479
6SGB|1|CA|C|480
6SGB|1|CA|A|481
6SGB|1|CA|U|482
6SGB|1|CA|A|483
6SGB|1|CA|A|484
6SGB|1|CA|U|485
6SGB|1|CA|C|486
6SGB|1|CA|A|487
6SGB|1|CA|A|488
6SGB|1|CA|A|489
6SGB|1|CA|A|490
6SGB|1|CA|U|491
6SGB|1|CA|U|492
6SGB|1|CA|U|493
6SGB|1|CA|A|494
6SGB|1|CA|U|495
6SGB|1|CA|U|496
6SGB|1|CA|A|497
6SGB|1|CA|U|498
6SGB|1|CA|U|499
6SGB|1|CA|U|500
6SGB|1|CA|A|501
6SGB|1|CA|U|502
6SGB|1|CA|A|503
6SGB|1|CA|U|504
6SGB|1|CA|U|505
6SGB|1|CA|A|506
6SGB|1|CA|A|507
6SGB|1|CA|A|508
6SGB|1|CA|U|509
6SGB|1|CA|A|510
6SGB|1|CA|U|511
6SGB|1|CA|G|512
6SGB|1|CA|U|513
6SGB|1|CA|A|514
6SGB|1|CA|U|515
6SGB|1|CA|G|516
6SGB|1|CA|U|517
6SGB|1|CA|G|518
Current chains
- Chain CA
- 9S rRNA
Nearby chains
- Chain CN
- uS14m
- Chain CS
- uS19m
- Chain Ci
- mS33
- Chain Ck
- mS35
- Chain DB
- mS49
- Chain DF
- mS53
- Chain DH
- mS55 (KRIPP8)
- Chain DJ
- mS57
- Chain DT
- mS67
- Chain DV
- mS69
- Chain DW
- mS70
- Chain DX
- mS71
- Chain DY
- mS72
- Chain F1
- mt-SAF1 (RSM22)
- Chain FF
- mt-SAF14
- Chain FG
- mt-SAF15
- Chain FI
- mt-SAF17
- Chain FJ
- mt-SAF18
- Chain FL
- mt-SAF20
Coloring options: