IL_6SKG_006

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAAC(OMC)UACC*GAUG(OMG)G

Length

15 nucleotides

Bulged bases

6SKG|1|Aa|A|109, 6SKG|1|Aa|A|110

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|U|108
6SKG|1|Aa|A|109
6SKG|1|Aa|A|110
6SKG|1|Aa|C|111
6SKG|1|Aa|OMC|112
6SKG|1|Aa|U|113
6SKG|1|Aa|A|114
6SKG|1|Aa|C|115
6SKG|1|Aa|C|116
*
6SKG|1|Aa|G|215
6SKG|1|Aa|A|216
6SKG|1|Aa|U|217
6SKG|1|Aa|G|218
6SKG|1|Aa|OMG|219
6SKG|1|Aa|G|220

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Af

30S ribosomal protein S4e

Chain Ak

30S ribosomal protein S8e

Chain As

30S ribosomal protein S17