IL_6SKG_049

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GA(OMG)(2MG)UGCAU*AUGCCC

Length

15 nucleotides

Bulged bases

6SKG|1|Aa|A|993, 6SKG|1|Aa|C|998

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|992
6SKG|1|Aa|A|993
6SKG|1|Aa|OMG|994
6SKG|1|Aa|2MG|995
6SKG|1|Aa|U|996
6SKG|1|Aa|G|997
6SKG|1|Aa|C|998
6SKG|1|Aa|A|999
6SKG|1|Aa|U|1000
*
6SKG|1|Aa|A|1156
6SKG|1|Aa|U|1157
6SKG|1|Aa|G|1158
6SKG|1|Aa|C|1159
6SKG|1|Aa|C|1160
6SKG|1|Aa|C|1161

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ac

30S ribosomal protein S3

Chain Am

30S ribosomal protein S10

Chain Ar

30S ribosomal protein S14 type Z