IL_6SKG_055

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACAAUG*CCUAAAC

Length

14 nucleotides

Bulged bases

6SKG|1|Aa|U|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|1199
6SKG|1|Aa|A|1200
6SKG|1|Aa|C|1201
6SKG|1|Aa|A|1202
6SKG|1|Aa|A|1203
6SKG|1|Aa|U|1204
6SKG|1|Aa|G|1205
*
6SKG|1|Aa|C|1236
6SKG|1|Aa|C|1237
6SKG|1|Aa|U|1238
6SKG|1|Aa|A|1239
6SKG|1|Aa|A|1240
6SKG|1|Aa|A|1241
6SKG|1|Aa|C|1242

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain Av

30S ribosomal protein S19e