IL_6SKG_073

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_073 not in the Motif Atlas

Geometric match to IL_1G1X_002

Geometric discrepancy: 0.1902

The information below is about IL_1G1X_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6SKG|1|BA|G|50
6SKG|1|BA|G|51
6SKG|1|BA|G|52
*
6SKG|1|BA|C|476
6SKG|1|BA|C|477

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain Bh

50S ribosomal protein L37e