IL_6SKG_077
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGAAUUG*CUUAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_077 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.1099
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
6SKG|1|BA|G|179
6SKG|1|BA|G|180
6SKG|1|BA|A|181
6SKG|1|BA|A|182
6SKG|1|BA|U|183
6SKG|1|BA|U|184
6SKG|1|BA|G|185
*
6SKG|1|BA|C|192
6SKG|1|BA|U|193
6SKG|1|BA|U|194
6SKG|1|BA|A|195
6SKG|1|BA|G|196
6SKG|1|BA|U|197
6SKG|1|BA|A|198
6SKG|1|BA|C|199
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BO
- 50S ribosomal protein L15
- Chain BP
- 50S ribosomal protein L15e
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bl
- 50S ribosomal protein L44e
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