IL_6SKG_078

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_078 not in the Motif Atlas

Homologous match to IL_4V9F_007

Geometric discrepancy: 0.1408

The information below is about IL_4V9F_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6SKG|1|BA|U|230
6SKG|1|BA|U|231
6SKG|1|BA|A|232
6SKG|1|BA|G|233
6SKG|1|BA|U|234
6SKG|1|BA|A|235
6SKG|1|BA|G|236
*
6SKG|1|BA|C|244
6SKG|1|BA|G|245
6SKG|1|BA|A|246
6SKG|1|BA|A|247
6SKG|1|BA|A|248
6SKG|1|BA|G|249

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e