IL_6SKG_100

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC(OMG)AAGC*GCGAU(A2M)GCUG

Length

17 nucleotides

Bulged bases

6SKG|1|BA|G|929, 6SKG|1|BA|G|933

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|C|798
6SKG|1|BA|C|799
6SKG|1|BA|OMG|800
6SKG|1|BA|A|801
6SKG|1|BA|A|802
6SKG|1|BA|G|803
6SKG|1|BA|C|804
*
6SKG|1|BA|G|927
6SKG|1|BA|C|928
6SKG|1|BA|G|929
6SKG|1|BA|A|930
6SKG|1|BA|U|931
6SKG|1|BA|A2M|932
6SKG|1|BA|G|933
6SKG|1|BA|C|934
6SKG|1|BA|U|935
6SKG|1|BA|G|936

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e