IL_6SKG_112

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUUG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_112 not in the Motif Atlas

Homologous match to IL_4V9F_036

Geometric discrepancy: 0.2534

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6SKG|1|BA|A|999
6SKG|1|BA|U|1000
6SKG|1|BA|U|1001
6SKG|1|BA|G|1002
*
6SKG|1|BA|C|1033
6SKG|1|BA|U|1034
6SKG|1|BA|G|1035
6SKG|1|BA|U|1036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e