IL_6SKG_117

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6SKG|1|BA|U|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_117 not in the Motif Atlas

Geometric match to IL_4V9F_039

Geometric discrepancy: 0.1611

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6SKG|1|BA|G|1138
6SKG|1|BA|U|1139
6SKG|1|BA|G|1140
*
6SKG|1|BA|C|1281
6SKG|1|BA|C|1282

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L13

Chain BT

50S ribosomal protein L18Ae

Chain Ba

50S ribosomal protein L30

Chain Bf

Ribosomal protein eL35A

Chain Bm

30S ribosomal protein S17e